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gene symbol
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0
votes
4
replies
2.5k
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DESeq2 swap ensembl gene id rownames with gene symbol column
deseq2
dataframe
ensembl gene id
gene symbol
entrezid
4.4 years ago
jason.williams
• 0
0
votes
3
replies
1.9k
views
DESeq2: removal of duplicated genes during statistical analysis
deseq2
gene symbol
ensembl
updated 5.4 years ago by
Michael Love
41k • written 5.5 years ago by
thkapell
▴ 10
1
vote
2
replies
937
views
Obtain GRanges object by gene names
GRanges
gene symbol
IdeoViz
5.5 years ago
Arman Shahrisa
▴ 20
0
votes
3
replies
1.6k
views
DMRcate package :How to find the gene associated with coordinate
dmrcate
gene symbol
coordinate
5.8 years ago
574233829
• 0
0
votes
3
replies
1.5k
views
Choosing most accurate gene symbol from multiple gene symbols
transcript_id
gene symbol
updated 8.7 years ago by
James W. MacDonald
65k • written 8.7 years ago by
Jo
▴ 30
2
votes
4
replies
13k
views
biomartRt: convert mouse gene symbol return multiple human gene symbol
biomart
gene symbol
updated 8.8 years ago by
Diego Diez
▴ 760 • written 9.0 years ago by
chang02_23
▴ 30
0
votes
2
replies
3.5k
views
Mapping gene IDs to gene symbol of KEGG pathways with "Pathview"
Pathview
KEGG
annotation
gene symbol
visualization
updated 8.9 years ago by
Luo Weijun
★ 1.6k • written 8.9 years ago by
alakatos
▴ 130
3
votes
3
replies
2.9k
views
Different answer from Homo.sapiens and biomaRt packages!!
biomart
homo.sapiens
genome regions
gene symbol
updated 9.0 years ago by
Hervé Pagès
16k • written 9.0 years ago by
NS
▴ 60
27
votes
21
replies
23k
views
Mapping genome regions to gene symbols
tcga cnv
gene symbol
coordinate
updated 18 months ago by
James W. MacDonald
65k • written 9.0 years ago by
NS
▴ 60
0
votes
3
replies
2.6k
views
filtering out probes with no gene symbol from expressionSet
probe
filter
subset
gene symbol
affy
9.2 years ago
alakatos
▴ 130
10 results • Page
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Comment: fgsea significant result
by
Chris
• 0
Thanks ATpoint! Setting a fixed seed can reproduce the same result. However, if someone else analyze the same data with different seed, the…
Comment: SGSeq: moving toward diffex from SGSeq analysis
by
Sara
• 0
Thank you for your response. I have another question about saving the sgvc result as a CSV file. I would appreciate your help, please. ``` …
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Poonam
• 0
I tried different block lengths first and considered 100000 to be ideal because of the almost similar inter-range distance. S1= bootRange…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
41k
The segmentation and block length are key parameters. We recommend for example blocks of length ~500kb. It would help if you would post yo…
Answer: Handling multiple differential expression comparisons
by
Michael Love
41k
It's typical that results are presented with each group having its own FDR control. So presenting each comparison with the adjusted p-va…
Votes
Answer: fgsea significant result
Answer: fgsea significant result
package goseq seems to be not available on the latest version of R
package goseq seems to be not available on the latest version of R
Print Differentially Expressed Exons From Dexseq Results
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